Package index • recall

All functions

FindClustersCountsplit(): Runs a typical Seurat workflow on a Seurat object (up to dimensionality reduction and clustering).

FindClustersRecall(): Runs a typical Seurat workflow on a Seurat object (up to dimensionality reduction and clustering).

compute_knockoff_filter(): Returns the genes selected by the knockoff filter

estimate_negative_binomial(): Maximum likelihood estimation for the negative binomial distribution.

estimate_zi_poisson_copula() estimate_negative_binomial_copula() estimate_poisson_copula() estimate_gaussian_copula(): todo

estimate_zi_poisson(): Maximum likelihood estimation for the zero-inflated Poisson distribution with Poisson parameter lambda and zero proportion prop.zero.

get_seurat_obj_with_artificial_variables(): Returns a Seurat object that contains additional (fake) RNA expression counts.

rzipoisson(): Random data generation for the zero-infalted Poisson distribution with Poisson parameter lambda and zero proportion prop.zero.

seurat_workflow(): Runs a typical Seurat workflow on a Seurat object (up to dimensionality reduction and clustering).