Returns the genes selected by the knockoff filter — compute_knockoff

Given two Seurat objects, returns the the genes selected by the knockoff filter and their W statistics.

Usage

compute_knockoff_filter(
  seurat_obj,
  cluster1,
  cluster2,
  q,
  return_all = FALSE,
  num_cores = 1,
  shared_memory_max
)

seurat_obj: A Seurat object
cluster1: The Idents of the cluster of interest in seurat_obj1
cluster2: The Idents of the cluster of interest in seurat_obj2
q: The desired rate to control the FDR at
return_all: Determines if the returned object will contain all genes or just the selected genes.
num_cores: The number of cores for computing marker genes in parallel.
shared_memory_max: The maximum size for shared global variables.

todo