Package index

Sparse Marginal Epistasis Analysis

Functions for the marginal epistasis analysis.

sme()

Sparse Marginal Epistasis Test (SME)

Simulate Quantitative Traits

Functions for simulating quantitative traits with pairwise epistasis.

simulate_traits()

Simulate Quantitative Traits from PLINK Genotypes

Utility Functions

Utility functions.

approximate_memory_requirements()

Estimate Memory Requirements for SME Routine

create_hdf5_file()

Create an HDF5 File

read_hdf5_dataset()

Read Dataset from an HDF5 File

write_hdf5_dataset()

Write Data to an HDF5 Dataset

Simulated Data Examples

RDA data files for illustration purposes.

getting_started

Simulated Dataset for Genome-Wide Interaction Analysis